EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

Download enhancer sequences:


Cell lines:
A549 BJ Caco-2 CD4+ CD8+ CD14+ CD19+ CD20+ CD34+ CD36+ CD133+
CMK CUTLL1 ECC-1 GM10847 GM12878 GM12891 GM12892 GM18486 GM18505 GM18507 GM18508
GM18516 GM18522 GM18526 GM18951 GM19099 GM19141 GM19193 GM19238 GM19239 GM19240 H1   
H9 H54 H128 H2171 HCT116 HEK293 HEK293T Hela Hela-S3 HepG2 HL-60   
HMEC HSMM HUES64 HUVEC IMR90 Jurkat K562 Kasumi-1 LNCaP LoVo LS174T   
MCF-7 MCF10A ME-1 MM1S NB4 NH-A NHDF NHEK NHLF NT2-D1 OCI-Ly1
P493-6 PANC-1 Raji SK-N-MC SK-N-SH T47D th1 U2OS U87 VCaP

Tissues:
Astrocyte Bronchia epithelial Esophagus Fetal brain Fetal heart Fetal kidney   
Fetal lung Fetal muscle leg Fetal placenta Fetal small intestine Fetal spinal cord Fetal stomach   
Fetal thymus Fibroblast foreskin Foreskin keratinocyte Heart Left ventricle Liver   
Lung Macrophage Myotube Osteoblast Ovary Pancreas   
Pancreatic islet Skeletal muscle Small intestine Spleen Thymus      

Download enhancer-gene interactions (V1.0):


Cell lines:
A549 BJ Caco-2 CD4+ CD8+ CD14+ CD19+ CD20+ CD34+ CD36+ CUTLL1
ECC-1 GM10847 GM12878 GM12891 GM12892 GM18505 GM18526 GM18951 GM19099 GM19193 H1
H9 HCT116 HEK293 HEK293T Hela Hela-S3 HepG2 HL-60 HMEC HSMM HUVEC   
IMR90 Jurkat K562 Kasumi-1 LNCaP MCF-7 MCF10A NHDF NHEK NHLF PANC-1   
SK-N-SH T47D th1 U2OS VCaP Astrocyte

Tissues:
Bronchia epithelial Esophagus Fetal heart Fetal kidney Fetal muscle leg Fetal placenta   
Fetal small intestine Fetal spinal cord Fetal stomach Fetal thymus Left ventricle Liver   
Lung Myotube Osteoblast Ovary Pancreas Skeletal muscle   
Small intestine Spleen Thymus   
     

※Data format in the file

Download enhancer-gene interactions (V2.0):


human tissue/cells:
A375 A549 AML_blast Astrocyte BJ Bronchia_epithelial
Caco-2 Calu-3 CD14+ CD19+ CD20+ CD34+
CD36+ CD4+ CD8+ Cerebellum CUTLL1 DOHH2
ECC-1 ESC_neuron Esophagus Fetal_heart Fetal_kidney Fetal_muscle_leg
Fetal_placenta Fetal_small_intestine Fetal_spinal_cord Fetal_stomach Fetal_thymus FT246
FT33 GM10847 GM12878 GM12891 GM12892 GM18505
GM18526 GM18951 GM19099 GM19193 GM19238 GM19239
GM19240 H1 H9 HCC1954 HCT116 HEK293T
HEK293 Hela-S3 Hela HepG2 HFF HL-60
hMADS-3 HMEC hNCC HSMM HT1080 HT29
HUVEC IMR90 Jurkat K562 Kasumi-1 KB
Keratinocyte Left_ventricle LHCN-M2 Liver LNCaP-abl LNCaP
Lung MCF-7 MCF10A ME-1 Melanocyte melanoma
Mesendoderm MS1 Myotube Namalwa NB4 NHDF
NHEK NHLF NKC OCI-Ly7 Osteoblast Ovary
PANC-1 Pancreas Pancreatic_islet PBMC PC3 PrEC
SGBS_adipocyte SK-N-SH SK-N-SH_RA Skeletal_muscle Small_intestine Sperm
Spleen T47D T98G th1 Thymus U2OS
VCaP ZR75-30

Mouse tissue/cells
3T3-L1 416B AtT-20 BAT Bone_marrow Brain_E14.5
Brown_preadipocyte_E18.5 C3H10Thalf CD19+ CD4+CD8+ CD4+Treg CD4+
CD8+ Cerebellum Cerebellum_neonate CH12 CMP Cortex
Dendritic_cell EpiLC EpiSC Erythroid_fetal_liver Erythroid_spleen ESC_Bruce4
ESC_J1 ESC_KH2 ESC_NPC Forebrain_E11.5 Forebrain_E12.5 Forelimb_bud_embryo
Forelimb_E11 Forelimb_E13 G1E-ER4 G1E GMP Heart_E11.5
Heart_E12.5 Heart_E14.5 Heart Hepatocyte HFSC Hindbrain_E11.5
Intestine IPSC Kidney Large_intestine_epithelial Lens_P1 Limb_E11.5
Limb_E14.5 Liver_E14.5 Liver Lung_E14.5 Lung Lung_neonate
MC3T3-E1 Megakaryocyte MEL Microglia Midbrain_E11 Neuron_cortical
NIH-3T3 NKC_spleen NKT NPC Olfactory_bulb Pancreas
Pancreatic_islet PDC_BM PDC Peritoneal_macrophage Placenta Pre-B
Pre-pro-B Pro-B_BM Prostate Rib_chondrocyte_P1 Spermatid Spleen
Stomach_neonate Striatum Testis Th1 Th2 Thymus
Treg_cell Uterus V6.5 WAT ZHBTc4