EnhancerAtlas 2.0

The database provides annotation of enhancers in the human (hg19) and mouse (mm9) genomes. The enhancers were predicted based on at least three independent high throughput experimental datasets (e.g. histone modification, CAGE, transcription factor binding and DHS). Currently, the database contains 2,811,699 enhancers from 6116 datasets of 150 mouse tissue/cell types, and 4,506,217 enhancers from 8573 datasets of 179 human tissue/cells, respectively. The database allows users to (1) examine the experimental evidences for the predicted enhancers in a given genomic region; (2) compare the enhancers across different cell/tissue types; (3) identify the enhancers associated with a gene; (4) predict the genes regulated by a set of cis-regulatory elements.

Cite us: Tianshun Gao, Bing He, Sheng Liu, Heng Zhu, Kai Tan and Jiang Qian. EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types. Bioinformatics 2016; doi: 10.1093/bioinformatics/btw495.

»EnhancerAtlas 1.0

Search enhancers by region:

Search enhancers by gene:

Species     Cell    Gene 


Compare enhancers across cells:

Compare enhancers of gene across cells:

Generate enhancer-gene network:

Species     Cell    Region 


Predict target genes for genomic regions (e.g. peaks from ChIP-Seq):



Please select species to show all cell types ※